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Getting Started Guide
The Genome Center
To other GC Cores –> Bioinformatics, Metabolomics, Proteomics, …
Bioinformatics Core
Metabolomics Core
Proteomics Core
Tilling Core
To important UC Cores–> Sample preps, 16S, qPCR, Flow Sorting, …
Host Microbe Systems Core — 16S
RT-qPCR Core — DNA/RNA extractions, Taqman
Sanger Sequencing Core
Cancer Center Shared Genomics Resource
Flow Cytometry & Sorting
Getting Started
Getting Started Guide
Sample Submission Instructions
Intro: Illumina Sequencing
Intro: Element Biosciences AVITI Sequencing
Intro: Pacbio Sequencing
Intro: Nanopore Sequencing
Services
Short-Read Sequencing Services – Illumina & Element Bio AVITI
DNA Sequencing (whole-genome shotgun, targeted, amplicon, exome, ChIP, reduced-representation, Methyl, …)
RNA-Sequencing (high-throughput mRNA-Seq, total RNA-seq, 3′-Tag-Seq, miRNA-seq, … )
Gene Expression Profiling with 3′-Tag-Seq
PacBio Revio Library Prep & Sequencing
Nanopore Sequencing – PromethION
Linked Read Sequencing – 10X Genomics Chromium Technology
High Molecular Weight DNA Isolation (HMW-DNA)
Sample and Library Requirements Tables
DNA/RNA Quantification & Library QC
DNA and RNA Extraction at the Taqman Core
Single Cell Expression Profiling & Genomics (10X Genomics, Parse Biosciences, and Plate-based scRNA-Seq)
Spatial Transcriptomics
Genotyping – Illumina Infinium, Fluidigm EP1
Infinium Genotyping
Fluidigm EP1
Consultations
Bioinformatics –>
Sequencing Data Download & Access
Genotyping Data
Sample Submission
Sample Requirements: DNA, RNA, Libraries (Illumina & AVITI)
Sample Submission & Shipping
Downloads/Forms
Prices
UC Rates – UC Davis and other UC campuses
Academic/Non-Profit Rates
Industry Rates
FAQ
FAQ
Introduction To HT Sequencing Technologies –>
Intro: Illumina Sequencing
Intro: Element Bio AVITI Sequencing
Intro: PacBio Sequencing
Intro: Nanopore Sequencing
Shared Equipment
Booking Shared Instruments – Equipment Calendar
Equipment Training & Use
Agilent Bioanalyzer 2100
FilterMax F5 Plate Reader
Qubit Fluorometer
Caliper LabChip GX (high-throughput Bioanalyzer)
Nanodrop Spectrophotometer
Sonicators
Covaris E220
Diagenode Bioruptor & Bioruptor NGS
BluePippin and PippinHT
Robotic Liquid Handlers
Fluidigm C1 – Single Cell Genomics
Fluidigm Access Array
Equipment Calendar
News & Workshops
News/Blog
Courses and Workshops
Newsletter/Listserv
Accounts & Calendars
Booking Shared Instruments & Training – PPMS Equipment Calendar
Submission System
PPMS Account Login
SLIMS Account Login
Sequencing Calendar & Queue
Free Consultations
Downloading Your Bioanalyzer & Plate Reader Data
(Legacy) Genome Center Account Login
Contact
Contact Us
People – Contacts for Instrument Expertise
Shipping Address
Directions
Free Consultations
Newsletter/Listserv
July 2014: New Core Manager and Core Personnel
Posted on
July 2, 2014
by
Vanessa Rashbrook
Newsletter DNA Technologies Core June 2014
‹
PacBio Sequence Assembly Workshop: Tuesday Dec 17th 4-7PM, 1005 GBSF
Genome Center Cores Pilot Grant Program
›
Posted in
News
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Recent Posts
Introducing a New Generation of Sequencers – #2 The AVITI
Introducing a New Generation of Sequencers – #1 The Revio
Pacbio REVIO Launch Party on March 12th
Holiday Schedule
Core operations resume in Phase 2 of the COVID response
Latest Tweets
Important Information
About Us / Services
Short-read (Illumina) Library Construction Services
Short-Read Sequencing Services – Illumina & Element Bio AVITI
PacBio Revio and Sequel II Library Prep & Sequencing
Getting Started Guide
Illumina & Aviti Sample and Library Requirements
Sample Submission, Scheduling, Shipping
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